Citing InterProScan

Latest publications

If you find InterPro useful for your research, please cite the following publications:

InterPro

The InterPro protein families and domains database: 20 years on Matthias Blum, Hsin-Yu Chang, Sara Chuguransky, Tiago Grego, Swaathi Kandasaamy, Alex Mitchell, Gift Nuka, Typhaine Paysan-Lafosse, Matloob Qureshi, Shriya Raj, Lorna Richardson, Gustavo A Salazar, Lowri Williams, Peer Bork, Alan Bridge, Julian Gough, Daniel H Haft, Ivica Letunic, Aron Marchler-Bauer, Huaiyu Mi, Darren A Natale, Marco Necci, Christine A Orengo, Arun P Pandurangan, Catherine Rivoire, Christian J A Sigrist, Ian Sillitoe, Narmada Thanki, Paul D Thomas, Silvio C E Tosatto, Cathy H Wu, Alex Bateman, Robert D Finn Nucleic Acids Research (2020), gkaa977, PMID: 33156333

InterProScan

InterProScan 5: genome-scale protein function classification Philip Jones, David Binns, Hsin-Yu Chang, Matthew Fraser, Weizhong Li, Craig McAnulla, Hamish McWilliam, John Maslen, Alex Mitchell, Gift Nuka, Sebastien Pesseat, Antony F. Quinn, Amaia Sangrador-Vegas, Maxim Scheremetjew, Siew-Yit Yong, Rodrigo Lopez, Sarah Hunter Bioinformatics (2014), PMID: 24451626

All previous publications

InterPro in 2019: improving coverage, classification and access to protein sequence annotations Alex L Mitchell, Teresa K Attwood, Patricia C Babbitt, Matthias Blum, Peer Bork, Alan Bridge, Shoshana D Brown, Hsin-Yu Chang, Sara El-Gebali, Matthew I Fraser, Julian Gough, David R Haft, Hongzhan Huang, Ivica Letunic, Rodrigo Lopez, Aurélien Luciani, Fabio Madeira, Aron Marchler-Bauer, Huaiyu Mi, Darren A Natale, Marco Necci, Gift Nuka, Christine Orengo, Arun P Pandurangan, Typhaine Paysan-Lafosse, Sebastien Pesseat, Simon C Potter, Matloob A Qureshi, Neil D Rawlings, Nicole Redaschi, Lorna J Richardson, Catherine Rivoire, Gustavo A Salazar, Amaia Sangrador-Vegas, Christian J A Sigrist, Ian Sillitoe, Granger G Sutton, Narmada Thanki, Paul D Thomas, Silvio C E Tosatto, Siew-Yit Yong, Robert D Finn Nucleic Acids Research (2019) Database Issue 47:D351–D360, PMID: 30398656

InterPro in 2017 — beyond protein family and domain annotations Robert D. Finn, Teresa K. Attwood, Patricia C. Babbitt, Alex Bateman, Peer Bork, Alan J. Bridge, Hsin-Yu Chang, Zsuzsanna Dosztányi, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Gemma L. Holliday, Hongzhan Huang, Xiaosong Huang, Ivica Letunic, Rodrigo Lopez, Shennan Lu, Aron Marchler-Bauer, Huaiyu Mi, Jaina Mistry, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Youngmi Park, Sebastien Pesseat, Damiano Piovesan, Simon C. Potter, Neil D. Rawlings, Nicole Redaschi, Lorna Richardson, Catherine Rivoire, Amaia Sangrador-Vegas, Christian Sigrist, Ian Sillitoe, Ben Smithers, Silvano Squizzato, Granger Sutton, Narmada Thanki, Paul D Thomas, Silvio C. E. Tosatto, Cathy H. Wu, Ioannis Xenarios, Lai-Su Yeh, Siew-Yit Young, Alex L. Mitchell Nucleic Acids Research (2017), Database Issue 45:D190–D199, PMID: 27899635

GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotation Sangrador-Vegas A, Mitchell AL, Chang HY, Yong SY, Finn RD Database: the Journal of Biological Databases and Curation (2016), 1–8, PMID: 26994912

The InterPro protein families database: the classification resource after 15 years Alex Mitchell, Hsin-Yu Chang, Louise Daugherty, Matthew Fraser, Sarah Hunter, Rodrigo Lopez, Craig McAnulla, Conor McMenamin, Gift Nuka, Sebastien Pesseat, Amaia Sangrador-Vegas, Maxim Scheremetjew, Claudia Rato, Siew-Yit Yong, Alex Bateman, Marco Punta, Teresa K. Attwood, Christian J.A. Sigrist, Nicole Redaschi, Catherine Rivoire, Ioannis Xenarios, Daniel Kahn, Dominique Guyot, Peer Bork, Ivica Letunic, Julian Gough, Matt Oates, Daniel Haft, Hongzhan Huang, Darren A. Natale, Cathy H. Wu, Christine Orengo, Ian Sillitoe, Huaiyu Mi, Paul D. Thomas, Robert D. Finn Nucleic Acids Research (2015), Database issue 43:D213-21, PMID: 25428371

InterPro in 2011: new developments in the family and domain prediction database Sarah Hunter; Philip Jones; Alex Mitchell; Rolf Apweiler; Teresa K. Attwood; Alex Bateman; Thomas Bernard; David Binns; Peer Bork; Sarah Burge; Edouard de Castro; Penny Coggill; Matthew Corbett; Ujjwal Das; Louise Daugherty; Lauranne Duquenne; Robert D. Finn; Matthew Fraser; Julian Gough; Daniel Haft; Nicolas Hulo; Daniel Kahn; Elizabeth Kelly; Ivica Letunic; David Lonsdale; Rodrigo Lopez; Martin Madera; John Maslen; Craig McAnulla; Jennifer McDowall; Conor McMenamin; Huaiyu Mi; Prudence Mutowo-Muellenet; Nicola Mulder; Darren Natale; Christine Orengo; Sebastien Pesseat; Marco Punta; Antony F. Quinn; Catherine Rivoire; Amaia Sangrador-Vegas; Jeremy D. Selengut; Christian J. A. Sigrist; Maxim Scheremetjew; John Tate; Manjulapramila Thimmajanarthanan; Paul D. Thomas; Cathy H. Wu; Corin Yeats; Siew-Yit Yong Nucleic Acids Research (2012), Database issue 40:D306–D312, PMID: 22096229

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation Burge, S., Kelly, E., Lonsdale, D., Mutowo-Muellenet, P., McAnulla, C., Mitchell, A., Sangrador-Vegas, A., Yong, S., Mulder, N., Hunter, S. Database: the Journal of Biological Databases and Curation (2012), PMID: 22301074

The InterPro BioMart: federated query and web service access to the InterPro Resource Jones P., Binns D., McMenamin C., McAnulla C., Hunter S. Database: the Journal of Biological Databases and Curation (2011), PMID: 21785143

InterPro protein classification McDowall J, Hunter S. Methods Mol Biol. (2011) Database issue 694:37-47, PMID: 21082426

InterPro: the integrative protein signature database Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C. Nucleic Acids Res. (2009), Database issue 37:D211-5, PMID: 18940856

The InterPro database and tools for protein domain analysis Mulder NJ, Apweiler R. Curr Protoc Bioinformatics (2008), Chapter 2:Unit 2.7, PMID: 18428686

InterPro and InterProScan: tools for protein sequence classification and comparison Mulder N, Apweiler R. Methods Mol Biol (2007), Database issue 396:59-70, PMID: 18025686

InterProScan: protein domains identifier Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R., Lopez R. Nucleic Acids Research (2005), Vol. 33, Issue suppl 2, PMID: 15980438

New developments in the InterPro database Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJ, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C. Nucleic Acids Research (2005), Database issue 35:D224-8, PMID: 17202162

InterPro, progress and status in 2005 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, Gough J, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McDowall J, Mitchell A, Nikolskaya AN, Orchard S, Pagni M, Ponting CP, Quevillon E, Selengut J, Sigrist CJ, Silventoinen V, Studholme DJ, Vaughan R, Wu CH. Nucleic Acids Res, Database issue 33:D201-5, PMID: 15608177

The InterPro Database, 2003 brings increased coverage and new features Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM. Nucleic Acids Res (2003), 1;31(1):315-8, PMID: 12520011

HMM-based databases in InterPro Bateman A, Haft DH. Brief Bioinform (2002), 3(3):236-45, PMID: 12230032

InterPro: an integrated documentation resource for protein families, domains and functional sites Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, Gouzy J, Griffith-Jones S, Haft D, Hermjakob H, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Orchard S, Pagni M, Peyruc D, Ponting CP, Servant F, Sigrist CJ; InterPro Consortium. Brief Bioinform (2002), 3(3):225-35, PMID: 12230031

Interactive InterPro-based comparisons of proteins in whole genomes Kanapin A, Apweiler R, Biswas M, Fleischmann W, Karavidopoulou Y, Kersey P, Kriventseva EV, Mittard V, Mulder N, Oinn T, Phan I, Servant F, Zdobnov E. Bioinformatics (2002), 18(2):374-5, PMID: 11847096

InterProScan — an integration platform for the signature-recognition methods in InterPro Zdobnov EM, Apweiler R. Bioinformatics (2001), 17(9):847-8, PMID: 11590104

InterPro — an integrated documentation resource for protein families, domains and functional sites Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM; InterPro Consortium. Bioinformatics (2000), 16(12):1145-50, PMID: 11159333

The InterPro database, an integrated documentation resource for protein families, domains and functional sites Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM. Nucleic Acids Res (2001), 1;29(1):37-40, PMID: 11125043