Known issues ============ Open issues in InterProScan --------------------------- This page documents the latest list of known issues, and we are working to fix them as soon as possible. For assistance with other InterProScan problems, `please contact us using EMBL EBI's support form `__. 1. CDD/RPSBlast errors ~~~~~~~~~~~~~~~~~~~~~~~ On some linux systems, you may get rpsblast errors like :: bin/blast/ncbi-blast-2.10.1+/rpsbproc: error while loading shared libraries: libgomp.so.1: cannot open shared object file: No such file or directory The missing library is libgomp1. On Ubuntu you might install it as follows: :: sudo apt-get install -y libgomp1 On other systems, you have similar installation commands 2. Coils errors ~~~~~~~~~~~~~~~~ If you see an error concerning **Coils**, for example the error below, it means the binary we provide is not compatible with your system. :: Cannot run program ".../bin/ncoils/2.2.1/ncoils": error=2, No such file or directory In this case, you may need to compile the **Coils** binary and it is straight forward as follows. :: cd src/coils/ncoils/2.2.1 make cd ../../../.. cp src/coils/ncoils/2.2.1/ncoils bin/ncoils/2.2.1/ncoils These steps should update the Coils binary. 3. Prosite/pfsearchV3 errors ~~~~~~~~~~~~~~~~ On some linux systems, you may get pfsearchV3 errors like :: Error output from binary: bin/prosite/pfsearchV3: error while loading shared libraries: libpcre2.so: cannot open shared object file: No such file or directory The missing library is pcre2. On Ubuntu you might install it as follows: :: sudo apt-get install -y libpcre2-dev On other systems, you have similar installation commands. Additionally on some systems, specially on cluster environments, the following error has been reported :: Error setting affinity! Error running prosite binary bin/prosite/pfsearchV3 This means the provided binary is not compatible with your system. We have included alternative binaries that you can try, by updating you **interproscan.properties** file to point to the alternative binaries: :: binary.prosite.pfscanv3.path=${bin.directory}/prosite/altbin/pfscanV3.noaf binary.prosite.pfsearchv3.path=${bin.directory}/prosite/altbin/pfsearchV3.noaf If the problem persist, you may need to compile those binaries from `source `__, making sure to build without affinity by compiling with the flag :: cmake -DUSE_AFFINITY=OFF .. If you encounter errors not listed above, `please contact us using EMBL EBI's support form `__. Contacting us ~~~~~~~~~~~~~ please give us enough background information when you contact us, such as: - the linux distribution and version - the InterProScan version - the java version - command line used - the complete error log if possible